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Biographical Sketch
Robert A. Lamb, Ph.D., Sc.D.--

John Evans Professor of Molecular and Cellular Biology in the Department of Molecular Biosciences at Northwestern University, Professor of Microbiology-Immunology at Northwestern University Medical School and an Investigator of the Howard Hughes Medical Institute.  

Dr. Lamb received his undergraduate degree reading biochemistry at the University of Birmingham, England, and he received his Ph.D. and Sc.D. degrees from the University of Cambridge. He came to the United States to do postdoctoral work with Purnell Choppin at the Rockefeller University, where he later became a faculty member before joining the faculty of Northwestern University. His honors include consecutive NIH MERIT awards. He is past president of the American Society for Virology. Dr. Lamb is a member of the National Academy of Sciences and a Fellow of the American Academy of Arts and Sciences.

Contact Information
Tel: (847)-491-5433
Fax: (847-491-2467
e-mail: ralamb@northwestern.edu
Dr. Lamb's CV
Links (Research-Related, Journals, Funding, Grants)


Short Summary of Research
Robert Lamb's laboratory studies the replication of influenza virus and paramyxoviruses, particularly virus-mediated membrane fusion, the action of the M2 and BM2 protein-selective ion channels, enveloped virus assembly and how these viruses defeat innate immunity.

Structure and Replication of Influenza Virus and Paramyxoviruses
Our laboratory is investigating the molecular structure and the mechanism of replication of influenza A, B and C viruses and the paramyxovirus SV5 (simian virus 5). Influenza viruses cause important diseases in humans and animals. Influenza A and B viruses have tremendous socioeconomic consequences, for influenza continues to occur in regular epidemics and occasional pandemics and is a leading cause of morbidity and mortality. Paramyxoviruses cause many biologically and economically important diseases of humans and lower animals. Besides SV5, these viruses include human parainfluenza virus types 1-4, mumps virus, measles virus, canine distemper virus, Newcastle disease virus of chickens, and rinderpest of cattle.

Influenza virus and SV5 are being studied not only because of their importance as the causative agents of major diseases but also because they provide excellent models for a variety of integral membrane proteins, particularly the processes by which these viruses enter cells and assemble at the plasma membrane. Since the major glycoproteins are also the predominant antigenic determinants of the viruses, knowledge about their structure should enhance our understanding of how they act as immunological targets, thus aiding in developing new vaccines.

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Virus Mediated Cell-to-Cell Fusion
Paramyxoviruses enter cells by fusion of the viral envelope with the cellular plasma membrane and the viral fusion protein (F) mediates this process. This protein is synthesized as a precursor that has to be cleaved for the protein to be biologically active. The initial folding of the F protein causes it to be trapped energetically in a metastable form. Cleavage causes a significant conformational change in the protein but it remains in a metastable form. Activation of the F protein for fusion activity requires coexpression of the viral receptor-binding protein, hemagglutinin-neuraminidase (HN). When HN binds its receptor, sialic acid, HN undergoes a conformational change, which in turn causes a further conformational change in the F protein. Finally, refolding of the F protein and the formation of a six-helix bundle (6HB) (core trimer) cause the merger of the cell target membrane with the viral membrane. Recently, we have found that activation of the paramyxovirus fusion protein is modulated by inside-out signaling from the cytoplasmic tail. We are using a combination of cellular assays, biophysical measurements and microscopic assays as well as protein structural determination at the atomic level to approach this problem.

We have hypothesized that the F protein is a biological nanomachine that undergoes a series of conformational changes and it is controlled such that fusion only occurs at the right time and in the right place.

Recently we determined the crystal structure of both the pre-fusion and post-fusion forms of the paramyxovirus F protein in collaboration with Theodore Jardetzky (Northwestern University). The pre-fusion F structure was solved for PIV5 and the post-fusion F structure was solved for hPIV3. In the large part the structures are thought to be representative of the F structures of all paramyxoviruses. To produce a soluble form of the pre-fusion F protein we appended an engineered, trimeric coiled coil domain (GCNt) to heptad repeat B (HRB) to mimic the transmembrane domains. The resulting F protein (F-GCNt) assembled into well-defined trimers. The pre-fusion F stucture contains a globular head attached to a trimeric coiled-coil stalk formed by the C-terminal heptad repeat B region (HRB). The globular head contains three domains (DI-DIII). The fusion peptides at the N-terminus of heptad repeat A (HRA) region are sequestered between adjacent subunits, with cleavage/activation sites exposed at the protein surface.

The post-fusion F forms a trimer, which reveals a globular, predominantly beta-sheet containing head domain, a neck region formed by both b-sheet and a-helices and a stalk region that is predominantly a-helical. The structure contained the 6HB expected of the post-fusion conformation of the protein. The only part of the structure lacking electron density are amino acids (95-135) begin 5 residues N-terminal to the internal cleavage site, extending through the fusion peptide (starting at residue 110) and the N-terminal part of HRA , but these residues would be draped flexibly on the exterior of the stalk region. It had been widely anticipated that cleavage of F at the cleavage site was a requirement for conversion to the post-fusion form. Nonetheless, many lines of evidence suggested that the observed F conformation represented the post-fusion form, although the polypeptide chains were intact in the crystal and the fusion peptide was not located at the appropriate end of the 6HB.

The PIV5 pre-fusion F and hPIV3 post-fusion F structures are in strikingly different conformations, consistent with a transition from pre- to post-fusion forms. We have observed related forms of the F protein in electron micrographs of F. None of the intersubunit contacts are conserved in the pre- and post-fusion forms. The two F structures are related by flipping the stalk and TM domains relative to the F head. Substantial compacting of the head is observed in hPIV3 post-fusion F compared to PIV5 pre-fusion F. DI domains pivot slightly inwards, shearing intersubunit contacts, and DII domains swing across, contacting neighboring subunits.   Individual DI and DII domains in the two structures remain similar. DIII undergoes major refolding between the two structures, projecting a new coiled coil (HRA) upwards and away from DI, the pre-fusion stalk and the viral membrane. The fusion peptide, located at the top of the HRA coiled coil, moves ~115Å from its initial position between subunits in the pre-fusion conformation, allowing DII domains to reposition. None of the post-fusion HRA intersubunit coiled-coil contacts are observed in F-GCNt. Instead they are replaced by two sets of 6-helix rings at the DIII interfaces. For the HRA coiled coil to form, DIII must rotate and collapse inwards, further compacting the head.

The conformational change also requires the opening and translocation of the HRB stalk. In the pre-fusion form, HRB is located at the base of the head region. During the conversion to the post-fusion conformation, HRB segments must separate and swing around the base of the head, to pack against the HRA coiled coil. In the prefusion conformation, HRA is broken up into 4 helices, 2 b-strands and 5 loop, kink or turn segments. Thus, the conformational changes in HRA involve the refolding of 11 distinct segments into a single, extended a-helical conformation.

The pre-fusion F structure provides a model for the stepwise induction of membrane fusion by paramyxoviruses and reveals how multiple sequence elements play distinct structural roles in the pre- and post-fusion conformations.

We also solved the atomic structure of the tetrameric paramyxovirus HN protein to a resolution of 2. 8 Å, in collaboration with Theodore Jardetzky. Based on the HN structure we propose a model for HN involvement in membrane fusion that is consistent with the available data and that involves ligand-dependent changes in the HN oligomer that are driven by surface:surface interactions. In this model, the HN dimer/tetramer forms in the absence of ligands and can interact with the F protein, potentially through lateral interactions on two sides of the tetramer. Engagement of cell surface receptors could trigger the partial disassembly of the HN tetramer, assuming that the energy of binding of the individual HN sites to distinct sialic receptors is sufficient to perturb the weak NA domain interactions. Opening of the tetrameric head, driven by the energy of receptor engagement, could lead to changes in both the HN stalk region (the HN stalk domain is thought to interact with F) and the interaction with F, thus activating F for membrane fusion.

 


Structure-Function Analysis of the Influenza Virus Ion Channel
Influenza virus protein M2 is a small (96-residue) integral membrane protein that spans the cell membrane once and is a disulfide-linked homotetramer. The M2 protein acts as an ion channel during the virus-uncoating process in endosomes, permitting a flow of protons into the interior of virus particles to disrupt protein-protein interactions. The M2 ion channel is specifically inhibited by the anti-viral drug amantadine and the M2 protein channel activity is activated by low pH, suggesting that the channel is only switched on in endosomes and the trans Golgi network: intracellular compartments with lowered pH. In collaboration with Lawrence Pinto (Northwestern University) we are studying properties of the M2 protein has ion channel activity in both mammalian cells and Xenopus laevis oocytes. Recently, we have found that the influenza B virus BM2 protein is a photon-selective ion channel.
Because the M2 protein ion channel is distinct in structure from almost all other ion channels and because of its simplicity of size, it provides a marvelous opportunity to understand how an ion channel functions. We are performing a detailed structure-function analysis of this channel to characterize further the residues involved in forming the channel pore using a combination of mutagenesis, molecular model building, electron paramagnetic resonance spectroscopy on spin-labeled M2 protein (in collaboration with Wayne Hubbell, University of California, Los Angeles) and solid phase nuclear magnetic resonance spectroscopy (in collaboration with Tim Cross, National High Magnetic Field Laboratory, Tallahassee Florida).

Enveloped Virus Assembly
We are attempting to understand the nature of the molecular interactions that are necessary to form a virus particle. The application of reverse genetics; i.e. the ability to rescue infectious influenza virus and paramyxoviruses from cloned DNA, facilitates these studies. It has been predicted that the cytoplasmic tails of the viral integral membrane proteins will interact with internal viral components. The nature of the protein-protein interactions is being pursued by using reverse genetics, biochemical methods and also by using the yeast genetics approach of interaction traps. We have shown for influenza virus that both the hemagglutinin and neuraminidase cytoplasmic tails are a critical determinant for forming normal virions. Similarly we have shown that the cytoplasmic tail of HN is required for normal virus budding. We are using an in vitro budding assay that enables us to determine the molecular requirements for virus assembly. We are also determining the possible role of mono-ubiquitination of viral proteins in correct assembly of cellular protein complexes that may mediate viral budding.

Paramyxovirus-Cellular Interactions: Anti-Interferon Responses
Most viruses induce interferons, cytokines that defend the cell from a virus infection. Thus, most viruses encode proteins that defeat either induction of interferon synthesis or prevent the induction of transcription of cellular genes caused by interferons binding to their receptors. The zinc-finger domain of the SV5 V protein mediates the proteasome-mediated degradation of the transcription factor STAT1 (signal transducer and activator of transcription). We are examining the pathway by which V protein mediates STAT1 destabilization. SV5-infection of cells also causes a lengthening of the normal cell cycle due to a slowed exit from S phase and a prolonged period in G2-M. The zinc-finger domain of the SV5 V protein also mediates the change in cell cycle progression and furthermore this domain also interacts with the cellular protein, DDB1 (damage DNA binding protein) and the E3-ubiquitin ligase, cullin 4A. We are determining the involvement of DDB1 and the cullins in the degradation of STAT1. The SV5 V protein also prevents the production of interferon in SV5-infected cells. The transcription factor, interferon regulatory factor 3 (IRF-3), which is required for interferon production, fails to be translocated into the nucleus. The biochemical basis for IRF-3 mislocalization is being investigated.

Some aspects of research in our laboratory on influenza virus and paramyxoviruses are supported by grants from the National Institutes of Health.

 

RESEARCH LINKS (back to top)

Research-Related (back to top)

American Society for Virology (ASV)

American Association for the Advancement of Science (AAAS)

All Virology on the WWW

CMS Molecular Biology Resource

NLM PubMed

Northwestern University Index of Electronic Resources

Howard Hughes Medical Institute

Molecular Biology Tool Server

Pedro's BioMolecular Research Tools

Society for General Microbiology

 

Journals (back to top)

Virology

Journal of Biological Chemistry

Journal of Virology

Journal of General Virology

Cell

EMBO

Highwire Press-Stanford

Journal of Cell Biology

Microbiology and Molecular Biology Reviews (mmbr)

Molecular Biology of the Cell

Molecular and Cellular Biology

Nature

PNAS

Science

 

Funding (back to top)

Research Opportunities and Funding for Northwestern University Undergraduates

Northwestern University Office of Research and Sponsored Programs

Science (AAS) Where to Search for Funding

UT Southwestern Grants Management: Funding Announcements

 

Specific Granting Agencies (back to top)

Damon Runyon Postdoctoral Fellowship

Fogarty Fellow Award

Fulbright Grants

Helen Hay Whitney Foundation

Howard Hughes Medical Institute

Human Frontier Science Program (fellowships to work in foreign laboratories)

Leukemia Society National Institutes of Health Grants

National Institutes of Health Grants

The National Academies Fellowships Listings

Chateaubriand Fellowship for Predoctoral Research in France

Travel Grants (Robert H. Lurie Comprehensive Cancer Center of Northwestern University) (back to top)

Katten Muchin Rosenman Travel Scholarship Program

Center for Genetic Medicine Travel Fellowship

Cancer Prevention and Control Travel Scholarship Program

 

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Last Updated March 8, 2017